jd2112.r-universe.dev

[jd2112] AlveolarCellTypeDeconvolution 0.1.0

jyotirmoy21@gmail.com (Jyotirmoy Das) — Mon, 04 May 2026 13:09:02 GMT

Scripts and analyses for alveolar cell type deconvolution.

[jd2112] hrbrthemes 0.9.2

bob@rud.is (Bob Rudis) — Sun, 19 Apr 2026 13:43:31 GMT

A compilation of extra 'ggplot2' themes, scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography. A copy of the 'Google' font 'Roboto Condensed' is also included.

[jd2112] ShinyWGCNA 0.1.0

jyotirmoy21@gmail.com (Jyotirmoy Das) — Mon, 16 Mar 2026 15:24:30 GMT

An interactive dashboard for WGCNA.

[jd2112] ComplexPCA 0.1.0

jyotirmoy21@gmail.com (Jyotirmoy Das) — Mon, 16 Mar 2026 15:24:14 GMT

An R package to generate a PCA biplot with customized complex annotations using ggplot2, FactoMineR, and factoextra.

[jd2112] olinkWrapper 1.3.0

jyotirmoy21@gmail.com (Jyotirmoy Das) — Thu, 12 Mar 2026 14:22:08 GMT

olinkWrapper provides a user-friendly interface for performing quick analysis of Olink data using the OlinkAnalyze package. It allows for data upload, parameter customization, visualization of results, and exporting of analysis outputs in comprehensive PDF report.

[jd2112] extrafont 0.19

winston@stdout.org (Winston Chang) — Tue, 23 Sep 2025 14:47:02 GMT

Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols.

[jd2112] jyotirmoymanifest 0.1.0

jyotirmoy.das@liu.se (Jyotirmoy Das) — Wed, 25 Jun 2025 11:54:07 GMT

Provides an RStudio addin and function to insert a customizable "manifestation block" and author metadata into R scripts. The block includes intention-setting messages, script name, purpose, author information, creation/modification dates, citation instructions, and notes. User defaults can be preloaded from a configuration file to minimize repetition.

[jd2112] RefFreeEWAS 2.2

eahouseman@gmail.com (E. Andres Houseman) — Fri, 14 Dec 2018 05:00:03 GMT

Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, ) is similar to non-negative matrix factorization, with additional constraints and additional utilities.