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extrafont - Tools for Using Fonts

Tools to using fonts other than the standard PostScript fonts. This package makes it easy to use system TrueType fonts and with PDF or PostScript output files, and with bitmap output files in Windows. extrafont can also be used with fonts packaged specifically to be used with, such as the fontcm package, which has Computer Modern PostScript fonts with math symbols.

Last updated

12.74 score 331 stars 11 dependents 19k scripts 24k downloads

hrbrthemes - Additional Themes, Theme Components and Utilities for 'ggplot2'

A compilation of extra 'ggplot2' themes, scales and utilities, including a spell check function for plot label fields and an overall emphasis on typography. A copy of the 'Google' font 'Roboto Condensed' is also included.

Last updated

data-visualizationdatavisualizationggplot-extensionggplot2ggplot2-scalesggplot2-themesvisualization

11.38 score 1.4k stars 2 dependents 10.0k scripts 9.8k downloads

ShinyWGCNA - A Shiny implementation for WGCNA

An interactive dashboard for WGCNA.

Last updated

dnamethylationrnaseqshiny

2.49 score 1 stars 31 scripts

olinkWrapper - olinkWrapper provides a user-friendly interface for performing quick analysis of Olink data

olinkWrapper provides a user-friendly interface for performing quick analysis of Olink data using the OlinkAnalyze package. It allows for data upload, parameter customization, visualization of results, and exporting of analysis outputs in comprehensive PDF report.

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olinkshiny-appsstatistical-analysisvisualization

2.30 score 1 stars

RefFreeEWAS - EWAS using Reference-Free DNA Methylation Mixture Deconvolution

Reference-free method for conducting EWAS while deconvoluting DNA methylation arising as mixtures of cell types. The older method (Houseman et al., 2014,<doi:10.1093/bioinformatics/btu029>) is similar to surrogate variable analysis (SVA and ISVA), except that it makes additional use of a biological mixture assumption. The newer method (Houseman et al., 2016, <doi:10.1186/s12859-016-1140-4>) is similar to non-negative matrix factorization, with additional constraints and additional utilities.

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2.15 score 1 dependents 47 scripts 34 downloads

AlveolarCellTypeDeconvolution - DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types

Scripts and analyses for alveolar cell type deconvolution.

Last updated

alveolar-lymphocytesalveolar-macrophagescd3cell-deconvolutiondna-methylationhla-dr

2.00 score 1 stars

ComplexPCA - A ggplot PCA with complex annotation

An R package to generate a PCA biplot with customized complex annotations using ggplot2, FactoMineR, and factoextra.

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annotateggplot2pca

2.00 score 2 stars

jyotirmoymanifest - Insert Manifestation and Author Blocks in R Scripts

Provides an RStudio addin and function to insert a customizable "manifestation block" and author metadata into R scripts. The block includes intention-setting messages, script name, purpose, author information, creation/modification dates, citation instructions, and notes. User defaults can be preloaded from a configuration file to minimize repetition.

Last updated

author-manifestinteractive-r-packagemanifestscript-authorship

1.70 score 3 scripts